Create New Item
Item Type
File
Folder
Item Name
Search file in folder and subfolders...
Are you sure want to rename?
File Manager
/
admin
/
installer
/
css
/
sass
/
sym404
/
root
/
usr
/
local
/
lib64
/
python3.6
/
site-packages
/
sklearn
/
utils
/
tests
:
test_testing.py
Advanced Search
Upload
New Item
Settings
Back
Back Up
Advanced Editor
Save
import warnings import unittest import sys import os import atexit import numpy as np from scipy import sparse import pytest from sklearn.utils.deprecation import deprecated from sklearn.utils.metaestimators import if_delegate_has_method from sklearn.utils._testing import ( assert_raises, assert_warns, assert_no_warnings, set_random_state, assert_raise_message, ignore_warnings, check_docstring_parameters, assert_allclose_dense_sparse, assert_raises_regex, TempMemmap, create_memmap_backed_data, _delete_folder, _convert_container, raises, ) from sklearn.tree import DecisionTreeClassifier from sklearn.discriminant_analysis import LinearDiscriminantAnalysis def test_set_random_state(): lda = LinearDiscriminantAnalysis() tree = DecisionTreeClassifier() # Linear Discriminant Analysis doesn't have random state: smoke test set_random_state(lda, 3) set_random_state(tree, 3) assert tree.random_state == 3 def test_assert_allclose_dense_sparse(): x = np.arange(9).reshape(3, 3) msg = "Not equal to tolerance " y = sparse.csc_matrix(x) for X in [x, y]: # basic compare with pytest.raises(AssertionError, match=msg): assert_allclose_dense_sparse(X, X*2) assert_allclose_dense_sparse(X, X) with pytest.raises(ValueError, match="Can only compare two sparse"): assert_allclose_dense_sparse(x, y) A = sparse.diags(np.ones(5), offsets=0).tocsr() B = sparse.csr_matrix(np.ones((1, 5))) with pytest.raises(AssertionError, match="Arrays are not equal"): assert_allclose_dense_sparse(B, A) def test_assert_raises_msg(): with assert_raises_regex(AssertionError, 'Hello world'): with assert_raises(ValueError, msg='Hello world'): pass def test_assert_raise_message(): def _raise_ValueError(message): raise ValueError(message) def _no_raise(): pass assert_raise_message(ValueError, "test", _raise_ValueError, "test") assert_raises(AssertionError, assert_raise_message, ValueError, "something else", _raise_ValueError, "test") assert_raises(ValueError, assert_raise_message, TypeError, "something else", _raise_ValueError, "test") assert_raises(AssertionError, assert_raise_message, ValueError, "test", _no_raise) # multiple exceptions in a tuple assert_raises(AssertionError, assert_raise_message, (ValueError, AttributeError), "test", _no_raise) def test_ignore_warning(): # This check that ignore_warning decorateur and context manager are working # as expected def _warning_function(): warnings.warn("deprecation warning", DeprecationWarning) def _multiple_warning_function(): warnings.warn("deprecation warning", DeprecationWarning) warnings.warn("deprecation warning") # Check the function directly assert_no_warnings(ignore_warnings(_warning_function)) assert_no_warnings(ignore_warnings(_warning_function, category=DeprecationWarning)) assert_warns(DeprecationWarning, ignore_warnings(_warning_function, category=UserWarning)) assert_warns(UserWarning, ignore_warnings(_multiple_warning_function, category=FutureWarning)) assert_warns(DeprecationWarning, ignore_warnings(_multiple_warning_function, category=UserWarning)) assert_no_warnings(ignore_warnings(_warning_function, category=(DeprecationWarning, UserWarning))) # Check the decorator @ignore_warnings def decorator_no_warning(): _warning_function() _multiple_warning_function() @ignore_warnings(category=(DeprecationWarning, UserWarning)) def decorator_no_warning_multiple(): _multiple_warning_function() @ignore_warnings(category=DeprecationWarning) def decorator_no_deprecation_warning(): _warning_function() @ignore_warnings(category=UserWarning) def decorator_no_user_warning(): _warning_function() @ignore_warnings(category=DeprecationWarning) def decorator_no_deprecation_multiple_warning(): _multiple_warning_function() @ignore_warnings(category=UserWarning) def decorator_no_user_multiple_warning(): _multiple_warning_function() assert_no_warnings(decorator_no_warning) assert_no_warnings(decorator_no_warning_multiple) assert_no_warnings(decorator_no_deprecation_warning) assert_warns(DeprecationWarning, decorator_no_user_warning) assert_warns(UserWarning, decorator_no_deprecation_multiple_warning) assert_warns(DeprecationWarning, decorator_no_user_multiple_warning) # Check the context manager def context_manager_no_warning(): with ignore_warnings(): _warning_function() def context_manager_no_warning_multiple(): with ignore_warnings(category=(DeprecationWarning, UserWarning)): _multiple_warning_function() def context_manager_no_deprecation_warning(): with ignore_warnings(category=DeprecationWarning): _warning_function() def context_manager_no_user_warning(): with ignore_warnings(category=UserWarning): _warning_function() def context_manager_no_deprecation_multiple_warning(): with ignore_warnings(category=DeprecationWarning): _multiple_warning_function() def context_manager_no_user_multiple_warning(): with ignore_warnings(category=UserWarning): _multiple_warning_function() assert_no_warnings(context_manager_no_warning) assert_no_warnings(context_manager_no_warning_multiple) assert_no_warnings(context_manager_no_deprecation_warning) assert_warns(DeprecationWarning, context_manager_no_user_warning) assert_warns(UserWarning, context_manager_no_deprecation_multiple_warning) assert_warns(DeprecationWarning, context_manager_no_user_multiple_warning) # Check that passing warning class as first positional argument warning_class = UserWarning match = "'obj' should be a callable.+you should use 'category=UserWarning'" with pytest.raises(ValueError, match=match): silence_warnings_func = ignore_warnings(warning_class)( _warning_function) silence_warnings_func() with pytest.raises(ValueError, match=match): @ignore_warnings(warning_class) def test(): pass class TestWarns(unittest.TestCase): def test_warn(self): def f(): warnings.warn("yo") return 3 with warnings.catch_warnings(): warnings.simplefilter("ignore", UserWarning) filters_orig = warnings.filters[:] assert assert_warns(UserWarning, f) == 3 # test that assert_warns doesn't have side effects on warnings # filters assert warnings.filters == filters_orig with pytest.raises(AssertionError): assert_no_warnings(f) assert assert_no_warnings(lambda x: x, 1) == 1 def test_warn_wrong_warning(self): def f(): warnings.warn("yo", FutureWarning) failed = False filters = sys.modules['warnings'].filters[:] try: try: # Should raise an AssertionError # assert_warns has a special handling of "FutureWarning" that # pytest.warns does not have assert_warns(UserWarning, f) failed = True except AssertionError: pass finally: sys.modules['warnings'].filters = filters if failed: raise AssertionError("wrong warning caught by assert_warn") # Tests for docstrings: def f_ok(a, b): """Function f Parameters ---------- a : int Parameter a b : float Parameter b Returns ------- c : list Parameter c """ c = a + b return c def f_bad_sections(a, b): """Function f Parameters ---------- a : int Parameter a b : float Parameter b Results ------- c : list Parameter c """ c = a + b return c def f_bad_order(b, a): """Function f Parameters ---------- a : int Parameter a b : float Parameter b Returns ------- c : list Parameter c """ c = a + b return c def f_too_many_param_docstring(a, b): """Function f Parameters ---------- a : int Parameter a b : int Parameter b c : int Parameter c Returns ------- d : list Parameter c """ d = a + b return d def f_missing(a, b): """Function f Parameters ---------- a : int Parameter a Returns ------- c : list Parameter c """ c = a + b return c def f_check_param_definition(a, b, c, d, e): """Function f Parameters ---------- a: int Parameter a b: Parameter b c : Parameter c d:int Parameter d e No typespec is allowed without colon """ return a + b + c + d class Klass: def f_missing(self, X, y): pass def f_bad_sections(self, X, y): """Function f Parameter ---------- a : int Parameter a b : float Parameter b Results ------- c : list Parameter c """ pass class MockEst: def __init__(self): """MockEstimator""" def fit(self, X, y): return X def predict(self, X): return X def predict_proba(self, X): return X def score(self, X): return 1. class MockMetaEstimator: def __init__(self, delegate): """MetaEstimator to check if doctest on delegated methods work. Parameters --------- delegate : estimator Delegated estimator. """ self.delegate = delegate @if_delegate_has_method(delegate=('delegate')) def predict(self, X): """This is available only if delegate has predict. Parameters ---------- y : ndarray Parameter y """ return self.delegate.predict(X) @if_delegate_has_method(delegate=('delegate')) @deprecated("Testing a deprecated delegated method") def score(self, X): """This is available only if delegate has score. Parameters --------- y : ndarray Parameter y """ @if_delegate_has_method(delegate=('delegate')) def predict_proba(self, X): """This is available only if delegate has predict_proba. Parameters --------- X : ndarray Parameter X """ return X @deprecated('Testing deprecated function with wrong params') def fit(self, X, y): """Incorrect docstring but should not be tested""" def test_check_docstring_parameters(): pytest.importorskip('numpydoc', reason="numpydoc is required to test the docstrings") incorrect = check_docstring_parameters(f_ok) assert incorrect == [] incorrect = check_docstring_parameters(f_ok, ignore=['b']) assert incorrect == [] incorrect = check_docstring_parameters(f_missing, ignore=['b']) assert incorrect == [] with pytest.raises(RuntimeError, match="Unknown section Results"): check_docstring_parameters(f_bad_sections) with pytest.raises(RuntimeError, match="Unknown section Parameter"): check_docstring_parameters(Klass.f_bad_sections) incorrect = check_docstring_parameters(f_check_param_definition) assert ( incorrect == [ "sklearn.utils.tests.test_testing.f_check_param_definition There " "was no space between the param name and colon ('a: int')", "sklearn.utils.tests.test_testing.f_check_param_definition There " "was no space between the param name and colon ('b:')", "sklearn.utils.tests.test_testing.f_check_param_definition " "Parameter 'c :' has an empty type spec. Remove the colon", "sklearn.utils.tests.test_testing.f_check_param_definition There " "was no space between the param name and colon ('d:int')", ]) messages = [ ["In function: sklearn.utils.tests.test_testing.f_bad_order", "There's a parameter name mismatch in function docstring w.r.t." " function signature, at index 0 diff: 'b' != 'a'", "Full diff:", "- ['b', 'a']", "+ ['a', 'b']"], ["In function: " + "sklearn.utils.tests.test_testing.f_too_many_param_docstring", "Parameters in function docstring have more items w.r.t. function" " signature, first extra item: c", "Full diff:", "- ['a', 'b']", "+ ['a', 'b', 'c']", "? +++++"], ["In function: sklearn.utils.tests.test_testing.f_missing", "Parameters in function docstring have less items w.r.t. function" " signature, first missing item: b", "Full diff:", "- ['a', 'b']", "+ ['a']"], ["In function: sklearn.utils.tests.test_testing.Klass.f_missing", "Parameters in function docstring have less items w.r.t. function" " signature, first missing item: X", "Full diff:", "- ['X', 'y']", "+ []"], ["In function: " + "sklearn.utils.tests.test_testing.MockMetaEstimator.predict", "There's a parameter name mismatch in function docstring w.r.t." " function signature, at index 0 diff: 'X' != 'y'", "Full diff:", "- ['X']", "? ^", "+ ['y']", "? ^"], ["In function: " + "sklearn.utils.tests.test_testing.MockMetaEstimator." + "predict_proba", "Parameters in function docstring have less items w.r.t. function" " signature, first missing item: X", "Full diff:", "- ['X']", "+ []"], ["In function: " + "sklearn.utils.tests.test_testing.MockMetaEstimator.score", "Parameters in function docstring have less items w.r.t. function" " signature, first missing item: X", "Full diff:", "- ['X']", "+ []"], ["In function: " + "sklearn.utils.tests.test_testing.MockMetaEstimator.fit", "Parameters in function docstring have less items w.r.t. function" " signature, first missing item: X", "Full diff:", "- ['X', 'y']", "+ []"], ] mock_meta = MockMetaEstimator(delegate=MockEst()) for msg, f in zip(messages, [f_bad_order, f_too_many_param_docstring, f_missing, Klass.f_missing, mock_meta.predict, mock_meta.predict_proba, mock_meta.score, mock_meta.fit]): incorrect = check_docstring_parameters(f) assert msg == incorrect, ('\n"%s"\n not in \n"%s"' % (msg, incorrect)) class RegistrationCounter: def __init__(self): self.nb_calls = 0 def __call__(self, to_register_func): self.nb_calls += 1 assert to_register_func.func is _delete_folder def check_memmap(input_array, mmap_data, mmap_mode='r'): assert isinstance(mmap_data, np.memmap) writeable = mmap_mode != 'r' assert mmap_data.flags.writeable is writeable np.testing.assert_array_equal(input_array, mmap_data) def test_tempmemmap(monkeypatch): registration_counter = RegistrationCounter() monkeypatch.setattr(atexit, 'register', registration_counter) input_array = np.ones(3) with TempMemmap(input_array) as data: check_memmap(input_array, data) temp_folder = os.path.dirname(data.filename) if os.name != 'nt': assert not os.path.exists(temp_folder) assert registration_counter.nb_calls == 1 mmap_mode = 'r+' with TempMemmap(input_array, mmap_mode=mmap_mode) as data: check_memmap(input_array, data, mmap_mode=mmap_mode) temp_folder = os.path.dirname(data.filename) if os.name != 'nt': assert not os.path.exists(temp_folder) assert registration_counter.nb_calls == 2 def test_create_memmap_backed_data(monkeypatch): registration_counter = RegistrationCounter() monkeypatch.setattr(atexit, 'register', registration_counter) input_array = np.ones(3) data = create_memmap_backed_data(input_array) check_memmap(input_array, data) assert registration_counter.nb_calls == 1 data, folder = create_memmap_backed_data(input_array, return_folder=True) check_memmap(input_array, data) assert folder == os.path.dirname(data.filename) assert registration_counter.nb_calls == 2 mmap_mode = 'r+' data = create_memmap_backed_data(input_array, mmap_mode=mmap_mode) check_memmap(input_array, data, mmap_mode) assert registration_counter.nb_calls == 3 input_list = [input_array, input_array + 1, input_array + 2] mmap_data_list = create_memmap_backed_data(input_list) for input_array, data in zip(input_list, mmap_data_list): check_memmap(input_array, data) assert registration_counter.nb_calls == 4 @pytest.mark.parametrize( "constructor_name, container_type", [ ('list', list), ('tuple', tuple), ('array', np.ndarray), ('sparse', sparse.csr_matrix), ('sparse_csr', sparse.csr_matrix), ('sparse_csc', sparse.csc_matrix), ('dataframe', lambda: pytest.importorskip('pandas').DataFrame), ('series', lambda: pytest.importorskip('pandas').Series), ('index', lambda: pytest.importorskip('pandas').Index), ('slice', slice), ] ) @pytest.mark.parametrize( "dtype, superdtype", [ (np.int32, np.integer), (np.int64, np.integer), (np.float32, np.floating), (np.float64, np.floating), ] ) def test_convert_container( constructor_name, container_type, dtype, superdtype, ): """Check that we convert the container to the right type of array with the right data type.""" if constructor_name in ("dataframe", "series", "index"): # delay the import of pandas within the function to only skip this test # instead of the whole file container_type = container_type() container = [0, 1] container_converted = _convert_container( container, constructor_name, dtype=dtype, ) assert isinstance(container_converted, container_type) if constructor_name in ("list", "tuple", "index"): # list and tuple will use Python class dtype: int, float # pandas index will always use high precision: np.int64 and np.float64 assert np.issubdtype(type(container_converted[0]), superdtype) elif hasattr(container_converted, "dtype"): assert container_converted.dtype == dtype elif hasattr(container_converted, "dtypes"): assert container_converted.dtypes[0] == dtype def test_raises(): # Tests for the raises context manager # Proper type, no match with raises(TypeError): raise TypeError() # Proper type, proper match with raises(TypeError, match="how are you") as cm: raise TypeError("hello how are you") assert cm.raised_and_matched # Proper type, proper match with multiple patterns with raises(TypeError, match=["not this one", "how are you"]) as cm: raise TypeError("hello how are you") assert cm.raised_and_matched # bad type, no match with pytest.raises(ValueError, match="this will be raised"): with raises(TypeError) as cm: raise ValueError("this will be raised") assert not cm.raised_and_matched # Bad type, no match, with a err_msg with pytest.raises(AssertionError, match="the failure message"): with raises(TypeError, err_msg="the failure message") as cm: raise ValueError() assert not cm.raised_and_matched # bad type, with match (is ignored anyway) with pytest.raises(ValueError, match="this will be raised"): with raises(TypeError, match="this is ignored") as cm: raise ValueError("this will be raised") assert not cm.raised_and_matched # proper type but bad match with pytest.raises( AssertionError, match="should contain one of the following patterns" ): with raises(TypeError, match="hello") as cm: raise TypeError("Bad message") assert not cm.raised_and_matched # proper type but bad match, with err_msg with pytest.raises(AssertionError, match="the failure message"): with raises( TypeError, match="hello", err_msg="the failure message" ) as cm: raise TypeError("Bad message") assert not cm.raised_and_matched # no raise with default may_pass=False with pytest.raises(AssertionError, match="Did not raise"): with raises(TypeError) as cm: pass assert not cm.raised_and_matched # no raise with may_pass=True with raises(TypeError, match="hello", may_pass=True) as cm: pass # still OK assert not cm.raised_and_matched # Multiple exception types: with raises((TypeError, ValueError)): raise TypeError() with raises((TypeError, ValueError)): raise ValueError() with pytest.raises(AssertionError): with raises((TypeError, ValueError)): pass